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Title: Diversity and selection in the major histocompatibility complex: DQA and immune function in IRL and Atlantic bottlenose dolphins (Tursiops truncatus).
Creator: Ferrer, Tatiana., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: The Major Histocompatibility Complex (MHC) encodes proteins critical to the vertebrate immune response; therefore MHC diversity is an indicator of population health. I have (1) Isolated exon 2 of the class II gene DQA in Tursiops truncatus in the North Indian River Lagoon (IRL) (n=17), South IRL (n=29) and adjacent Atlantic waters (n=20), (2) assessed genetic variability between groups, (3) developed a method to genotype individuals, (4) typed 11 unique alleles in 66 individuals, (5) detected...
Show moreThe Major Histocompatibility Complex (MHC) encodes proteins critical to the vertebrate immune response; therefore MHC diversity is an indicator of population health. I have (1) Isolated exon 2 of the class II gene DQA in Tursiops truncatus in the North Indian River Lagoon (IRL) (n=17), South IRL (n=29) and adjacent Atlantic waters (n=20), (2) assessed genetic variability between groups, (3) developed a method to genotype individuals, (4) typed 11 unique alleles in 66 individuals, (5) detected geographic patterns of diversity between estuarine and coastal individuals (FST=0.1255, p<0.05), (6) found evidence of positive selection centered in the binding pockets P1, P6 and P9 of the peptide binding region (w=2.08), (7) found that patterns of polymorphism did not closely match patterns of diversity in neutral markers, (8) performed a pilot study with Orcinus orca. The initial findings highlight the need for further comparative work and suggest that silent mutations are not neutral.
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Date Issued: 2013
PURL: http://purl.flvc.org/fcla/dt/3362335
Subject Headings: Major histocompatibility complex, Immunogenetics, Molecular genetics, Endocrine disrupting chemicals, Dolphins, Geographical distribution, Population genetics, Social behavior in animals
Format: Document (PDF)

Title: Function of glycinergic interplexiform cells in rod synaptic transmission.
Creator: Jiang, Zheng., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: The interplexiform cells(IP cells) are the most recently discovered neurons in the retina and their function is to provide centrifugal feedback in retina. The anatomical structure of the IP cells has been well studied, but the function of these neurons is largely unknown. I systematically studied the excitatory and inhibitory inputs from IP cells in salamander retina. I found that L-EPSCs in IP cells are mediated by AMPA and NMDA receptors; in addition, L-IPSCs are mediated by glycine...
Show moreThe interplexiform cells(IP cells) are the most recently discovered neurons in the retina and their function is to provide centrifugal feedback in retina. The anatomical structure of the IP cells has been well studied, but the function of these neurons is largely unknown. I systematically studied the excitatory and inhibitory inputs from IP cells in salamander retina. I found that L-EPSCs in IP cells are mediated by AMPA and NMDA receptors; in addition, L-IPSCs are mediated by glycine receptors and GABAC receptors. In response to light, IP cells reaction potentials transiently at the onset and onset of light stimulation. The major neural transmitter of IP cells in salamander retina is glycine. We also studied the distribution and function of glycine transporters. Our result indicates that GlyT1- and GlyT2-like transporters were present in Muller cells and neurons. The glycine feedback at outer plexiform layer (OPL) has effects on both the bipolar cell dendrites and rod photoreceptor terminals. At bipolar cell dendrites, glycine selectively depolarizes rod-dominant On-bipolar cells, and hyperpolarizes Off- bipolar cells. At rod photoreceptor terminals, 10 M glycine activates voltage-gated Ca2+ channels. These effects facilitated glutamate vesicle release in photoreceptors. It increases the sEPSC in OFF bipolar cells. The combined effect of glycine at rod terminals and bipolar cell dendrites leads to enhanced dim light signal transduction in the rod photoreceptor to ganglion cell pathway. This study provides a model that displays the function of centrifugal feedback through IP cells in the retina.
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Date Issued: 2009
PURL: http://purl.flvc.org/FAU/2708369
Subject Headings: Cellular signal transduction, Neurochemistry, Neuroplasticity, Synapses, Retina, Cytology, Visual pathways
Format: Document (PDF)

Title: Effects of stressors on differential gene expression and secondary metabolites by Axinella corrugata.
Creator: Grima, Jennifer., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Sponges are an important source of bioactive marine natural products, or secondary metabolites. The common Caribbean reef sponge, Axinella corrugata, produces an antitumor and antibacterial chemical, stevensine. This study determined whether environmental stressors, such as elevated temperature and exposure to Amphibalanus amphitrite larvae, affect the production of stevensine by A.corrugata and if the stressors caused A.corrugata to exhibit differential gene expression. Temperature stress...
Show moreSponges are an important source of bioactive marine natural products, or secondary metabolites. The common Caribbean reef sponge, Axinella corrugata, produces an antitumor and antibacterial chemical, stevensine. This study determined whether environmental stressors, such as elevated temperature and exposure to Amphibalanus amphitrite larvae, affect the production of stevensine by A.corrugata and if the stressors caused A.corrugata to exhibit differential gene expression. Temperature stress resulted in no significant change in the production of stevensine; only two genes were significantly differentially expressed, including hsp70. Larval stressed resulted in increased production of stevensine and significant differential gene expression (more than seventy genes). This study suggests that A.corrugata may be resilient to elevations in temperature and that one of stevensine's roles in nature is as an antifoulant.
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Date Issued: 2013
PURL: http://purl.flvc.org/fcla/dt/3360781
Subject Headings: Axinellida, Sponges, Marine pharmacology, Adaptation (Biology), Gene expression, Genetic regulation, Stress (Physiology), Ecophysiology
Format: Document (PDF)

Title: Engineered and natural TIMP mutations.
Creator: Hamze, Asmaa Bilal., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Tissue inhibitors of metalloproteinases (TIMPs) comprise a family of four proteins in humans that modulate the turnover of the extracellular matrix by regulating the activities of endopeptidases that catalyze its degradation, especially the matrix metalloproteinases (MMP). In general, the four TIMPs are broad-spectrum tight binding inhibitors of MMPs with individual differences in specificity. In this study, we attempted to understand the basis of such variation by using membrane type-1 MMP ...
Show moreTissue inhibitors of metalloproteinases (TIMPs) comprise a family of four proteins in humans that modulate the turnover of the extracellular matrix by regulating the activities of endopeptidases that catalyze its degradation, especially the matrix metalloproteinases (MMP). In general, the four TIMPs are broad-spectrum tight binding inhibitors of MMPs with individual differences in specificity. In this study, we attempted to understand the basis of such variation by using membrane type-1 MMP (MT1-MMP) as a model, since it is inefficiently inhibited by TIMP-1 in contrast with the other TIMPs. We designed and engineered mutations in the N-domain of TIMP-1, based on current knowledge of TIMP interactions. By measuring inhibition levels of each mutant against several MMPs, including MT1-MMP, we were able to obtain a triple mutant with an vii improved affinity for MT1-MMP., Our results, along with previous data, confirm that multiple residues in the critical interface segments between TIMPs and MMPs, namely at positions 2, 4, 5, 6, and 98, are key in determining the basic interaction between the two molecules. The second part of this work focused on naturally occurring mutations in TIMP-3 which cause an early form of macular degeneration called Sorsby's Fundus Dystrophy (SFD). The TIMP-3 mutants identified so far share certain features but the mechanism by which they result in macular disease is not yet understood. As an initial step, we expressed recombinant TIMP-3 carrying a truncation mutation, glutamic acid 139 to a stop codon (E139X), and assessed its activity towards representative MMPs and tumor necrosis factor-(Sa (Bconverting enzyme, another metalloproteinase normally inhibited by TIMP-3. Our results indicate that this mutation does not impair the inhibitory activity of TIMP-3., Expression of this mutant in mammalian retinal cells revealed a difference in localization between wild-type and E139X mutant TIMP-3. Therefore, we concluded that the SFD mutations may actually influence the processing and/or binding properties of TIMP-3 in the retina.
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Date Issued: 2008
PURL: http://purl.flvc.org/FAU/186296
Subject Headings: Proteolytic enzymes, Extracellular matrix proteins, Metalloproteinases, Inhibitors, Apoptosis, Retinal degeneration, Research
Format: Document (PDF)

Title: Effects of mid-incubation egg movement on loggerhead (Caretta caretta) turtle hatch success and embryo development.
Creator: Ahles, Natasha M., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Due to an emergency status dune restoration project following Subtropical Storm Andrea in 2007 on Singer Island, Florida, nests needed to be moved during early to mid-incubation. Nesting success was compared between those moved mid-incubation, moved within 12h to either a native sand incubation area or a renourished sand incubation area, and those left in-situ. Nests moved within 12h to the native sand had a significantly larger proportion of pipped hatchlings. Nests moved mid-incubation had...
Show moreDue to an emergency status dune restoration project following Subtropical Storm Andrea in 2007 on Singer Island, Florida, nests needed to be moved during early to mid-incubation. Nesting success was compared between those moved mid-incubation, moved within 12h to either a native sand incubation area or a renourished sand incubation area, and those left in-situ. Nests moved within 12h to the native sand had a significantly larger proportion of pipped hatchlings. Nests moved mid-incubation had a significantly lower proportion of hatched eggs as well as emergent hatchlings. The stage in which embryonic development was arrested corresponded to the stage the embryos were in during the time of movement; indicating movement was the cause of death. When comparing nests moved within the initial 2.5 weeks of development to those moved after 2.5 weeks of development, there was no significant difference in hatching success.
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Date Issued: 2009
PURL: http://purl.flvc.org/FAU/221948
Subject Headings: Sea turtles, Embryology, Wildlife conservation
Format: Document (PDF)

Title: Activators and repressors of transcription: using bioinformatics approaches to analyze and group human transcription factors.
Creator: Savitskaya, Ala., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Transcription factors are macromolecules that are involved in transcriptional regulation by interacting with specific DNA regions, and they can cause activation or silencing of their target genes. Gene regulation by transcriptional control explains different biological processes such as development, function, and disease. Even though transcriptional control has been of great interest for molecular biology, much still remains unknown. This study was designed to generate the most current list...
Show moreTranscription factors are macromolecules that are involved in transcriptional regulation by interacting with specific DNA regions, and they can cause activation or silencing of their target genes. Gene regulation by transcriptional control explains different biological processes such as development, function, and disease. Even though transcriptional control has been of great interest for molecular biology, much still remains unknown. This study was designed to generate the most current list of human transcription factor genes. Unique entries of transcription factor genes were collected and entered into Microsoft Office 2007 Access Database along with information about each gene. Microsoft Office 2007 Access tools were used to analyze and group collected entries according to different properties such as activator or repressor record, or presence of certain protein domains. Furthermore, protein sequence alignments of members of different groups were performed, and phylogenetic trees were used to analyze relationship between different members of each group. This work contributes to the existing knowledge of transcriptional regulation in humans.
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Date Issued: 2010
PURL: http://purl.flvc.org/FAU/1930495
Subject Headings: Transcription factors, Genetic transcription, Regulation, Cellular signal transduction, DNA microarrays, Bioinformatics
Format: Document (PDF)

Title: Activity patterns of green iguana (Iguana iguana) at Hugh Taylor Birch State Park, Fort Lauderdale, Florida.
Creator: Sekscienski, Stacey R., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Activity patterns of Iguana iguana from two locations within Hugh Taylor Birch State Park, Fort Lauderdale, Florida were documented and examined. Between May 1, 2006 to April 20, 2007, I. iguana were observed on a routine basis and activities were documented as one of six major activity categories (basking, locomotion, foraging, resting, visual signaling, and other). Data was analyzed to determine differences between activity patterns of I. iguana relative to sites, seasons, and size category...
Show moreActivity patterns of Iguana iguana from two locations within Hugh Taylor Birch State Park, Fort Lauderdale, Florida were documented and examined. Between May 1, 2006 to April 20, 2007, I. iguana were observed on a routine basis and activities were documented as one of six major activity categories (basking, locomotion, foraging, resting, visual signaling, and other). Data was analyzed to determine differences between activity patterns of I. iguana relative to sites, seasons, and size category within the park. Iguana iguana spent more time basking at Site 1 than Site 2. Size 4 animals which consisted of dominant adult males, spent more time basking than other males and adult females. Size 4 animals also spent less time foraging than hatchlings, juveniles, and other adults. These results complement the existing research on behavior of I. iguana and may be useful in determining invasive control efforts of I. iguana in Florida.
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Date Issued: 2012
PURL: http://purl.flvc.org/FAU/3359162
Subject Headings: Green iguana, Behavior, Adaptation (Biology)
Format: Document (PDF)

Title: Identification of longitudinals lacking (LOLA) target genes in Drosophila melanogaster.
Creator: Qureshi, Bazila., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Longitudinals lacking gene (LOLA) is a transcription factor that is involved in a variety of axon guidance decisions in Drosophila melanogaster nervous system. Besides having a role as an epigenetic silencer and in the programmed cell death in Drosophila's ovary, this gene is also an example of complex transcription unit. LOLA is a transcription repressor and can generate 17 DNA - binding isoforms, through alternative splicing, each containing distinct zinc-finger proteins. This unique...
Show moreLongitudinals lacking gene (LOLA) is a transcription factor that is involved in a variety of axon guidance decisions in Drosophila melanogaster nervous system. Besides having a role as an epigenetic silencer and in the programmed cell death in Drosophila's ovary, this gene is also an example of complex transcription unit. LOLA is a transcription repressor and can generate 17 DNA - binding isoforms, through alternative splicing, each containing distinct zinc-finger proteins. This unique DNAbinding binding sequence to which LOLA-ZFP binds has been determined for four of the lola isoforms F, J, P and K. Also, bioinformatics' tool approach has been taken to identify the target genes that are regulated by these four LOLA splice variants. Future work will be done for the five other LOLA isoforms to categorize their putative DNA-binding sequences and subsequently their protein interactions.
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Date Issued: 2010
PURL: http://purl.flvc.org/FAU/2684893
Subject Headings: Transcription factors, Cellular signal transduction, Zinc-finger proteins, Synthesis, Genetic transcription, Regulation, Drosophila melanogaster, Cytogenetics, Gene expression
Format: Document (PDF)

Title: Identification and characterization of mutations in the Drosophila mitochondrial translation elongation factor iconoclast.
Creator: Trivigno, Catherine F., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Mitochondrial disorders resulting from defects in oxidative phosphorylation are the most common form of inherited metabolic disease. Mutations in the human mitochondrial translation elongation factor GFM1 have recently been shown to cause the lethal pediatric disorder Combined Oxidative Phosphorylation Deficiency Syndrome (COXPD1). Children harboring mutations in GFM1 exhibit severe developmental, metabolic and neurological abnormalities. This work describes the identification and extensive...
Show moreMitochondrial disorders resulting from defects in oxidative phosphorylation are the most common form of inherited metabolic disease. Mutations in the human mitochondrial translation elongation factor GFM1 have recently been shown to cause the lethal pediatric disorder Combined Oxidative Phosphorylation Deficiency Syndrome (COXPD1). Children harboring mutations in GFM1 exhibit severe developmental, metabolic and neurological abnormalities. This work describes the identification and extensive characterization of the first known mutations in iconoclast (ico), the Drosophila orthologue of GFM1. Expression of human GFM1 can rescue ico null mutants, demonstrating functional conservation between the human and fly proteins. While point mutations in ico result in developmental defects and death during embryogenesis, animals null for ico survive until the second or third instar larval stage. These results indicate that in addition to loss-of-function consequences, point mutations in ico appear to produce toxic proteins with antimorphic or neomorphic effects. Consistent with this hypothesis, transgenic expression of a mutant ICO protein is lethal when expressed during development and inhibits growth when expressed in wing discs. In addition, animals with a single copy of an ico point mutation are more sensitive to acute hyperthermic or hypoxic stress. Removal of the positively-charged tail of the protein abolishes the toxic effects of mutant ICO, demonstrating that this domain is necessary for the harmful gain-of-function phenotypes observed in ico point mutants., Further, expression of GFP-tagged constructs indicates that the C-terminal tail enhances ectopic nuclear localization of mutant ICO, suggesting that mislocalization of the protein may play a role in the antimorphic effects of mutant ICO. Taken together, these results illustrate that in addition to loss-of-function effects, gain-of-function effects can contribute significantly to the pathology caused by mutation in mitochondrial translation elongation factors.
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Date Issued: 2010
PURL: http://purl.flvc.org/FAU/2705081
Subject Headings: Drosophila melanogaster, Cytogenetics, Mutation (Biology), Mitochondrial DNA, Cell metabolism, Cellular signal transduction, Oxidation, Physiological, Genetic transcription, Regulation
Format: Document (PDF)

Title: Habitat selection among fishes and shrimp in the pelagic Sargassum community: the role of habitat architecture.
Creator: Bennice, Chelsea, Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Pelagic Sargassum was used to determine the effects of habitat architecture for one species of shrimp (Leander tenuicornis) and two species of fish (Stephanolepis hispidus and Histrio histrio). Inter-thallus spacing (low, medium, and high) and depth (shallow versus deep) were manipulated independently to test whether the spatial components of habitat architecture. Two differing habitats (Sargassum versus seagrass species) were tested for the structural component of habitat architecture. There...
Show morePelagic Sargassum was used to determine the effects of habitat architecture for one species of shrimp (Leander tenuicornis) and two species of fish (Stephanolepis hispidus and Histrio histrio). Inter-thallus spacing (low, medium, and high) and depth (shallow versus deep) were manipulated independently to test whether the spatial components of habitat architecture. Two differing habitats (Sargassum versus seagrass species) were tested for the structural component of habitat architecture. There were no significant results for inter-thallus spacing experiments for L. tenuicornis and S. hispidus. H histrio selected habitats with medium inter-thallus spacing in two treatments. Large individual H. histrio contributed mostly to the significant effects. All three species selected habitats with a greater depth aspect. Finally, L. tenuicornis and H. histrio selected habitats with greater structural complexity (i.e., Sargassum). These results demonstrate clearly that habitat architecture of Sargassum influences habitat selection by these shrimp and fishes.
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Date Issued: 2012
PURL: http://purl.flvc.org/FAU/3358284
Subject Headings: Habitat (Ecology), Sargassum, Ecology, Animal behavior, Predation (Biology)
Format: Document (PDF)

Title: Habitat location and selection by the Sargassum crab Portunus sayi: the role of sensory cues.
Creator: West, Lorin E., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: The Sargassum community consists of a unique and idverse assemblage of fauna critical to pelagic food chains. Associated organisms presumably have adaptations to assist in finding Sargassum. This study investigated cues used for habitat location and selection by the Sargassum crab, Portunus sayi. Chemical detection trials were conducted with a two-chamber choice apparatus with Sargassum spp. and Thalassia testudinum as source odors. Visual detection trials (devoid of chemical cues) and...
Show moreThe Sargassum community consists of a unique and idverse assemblage of fauna critical to pelagic food chains. Associated organisms presumably have adaptations to assist in finding Sargassum. This study investigated cues used for habitat location and selection by the Sargassum crab, Portunus sayi. Chemical detection trials were conducted with a two-chamber choice apparatus with Sargassum spp. and Thalassia testudinum as source odors. Visual detection trials (devoid of chemical cues) and habitat selection trials were conducted in which crabs were given a choice of habitats. Results showed that P. sayi respoded to chemical odors from Sargassum spp. Crabs visually located habitats but did not visually distinguish between different habitats. In habitat selection trials, crabs selected Sargassum spp. over artificial Sargassum and T. testudinum. These results suggest that crabs isolated from Sargassum likely use chemoreception from longer distances ; within visual proximity of a potential patch, crabs use both chemical and visual information.
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Date Issued: 2012
PURL: http://purl.flvc.org/FAU/3356901
Subject Headings: Habitat (Ecology), Sargassum, Ecology, Marine chemical ecology, Chemoreceptors, Animal behavior, Animal communication, Portunus sayi, Ecology
Format: Document (PDF)

Title: Genetic differentiation among populations of bald eagles, Haliaeetus leucocephalus.
Creator: Helmick, Ericka Elizabeth., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: The bald eagle, Haliaeetus leucocephalus, population declined dramatically in the early 20th century reducing the population from tens of thousands of birds within the lower 48 states, to
Show moreThe bald eagle, Haliaeetus leucocephalus, population declined dramatically in the early 20th century reducing the population from tens of thousands of birds within the lower 48 states, to <450 pairs of birds, effectively inducing a population bottleneck. The overall population has recovered and was removed from the endangered species list in 2007. This study investigates whether such overall population statistics are appropriate descriptors for this widespread species. I investigated the genetic differentiation between three populations of bald eagles from Alaska, North Florida and Florida Bay using both mitochondrial and nuclear DNA loci to determine whether discrete subpopulations comprise the broad range. Significant FST values, for both mtDNA and microsatellites, were found between both Florida populations and Alaska, but not within Florida populations. Results indicate that there is strong population structure, rejecting the null hypothesis of a panmictic population. Future conservation efforts should focus on subpopulations rather than the overall population.
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Date Issued: 2011
PURL: http://purl.flvc.org/FAU/3171395
Subject Headings: Wildlife conservation, Birds, Molecular genetics, Gene targeting, Developmental biology, Biochemical markers
Format: Document (PDF)

Title: Nutrition and habitat driven foraging of wild dolphins in the Bahamas: a recipe for prey.
Creator: Malinowski, Christopher R., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Two sympatric dolphin species, Stenella frontalis and Tursiops truncatus, resident to Little Bahama Bank, Bahamas were found to mostly forage independent of one another, but occasionally foraged in mixed groups. Analysis of over 20 years of data revealed the degree of overlap to be minimal with spatially distinct regions identified for both species, environmental segregation based on depth, bottom type, temperature, and time of day. Results based on observational data indicated significant...
Show moreTwo sympatric dolphin species, Stenella frontalis and Tursiops truncatus, resident to Little Bahama Bank, Bahamas were found to mostly forage independent of one another, but occasionally foraged in mixed groups. Analysis of over 20 years of data revealed the degree of overlap to be minimal with spatially distinct regions identified for both species, environmental segregation based on depth, bottom type, temperature, and time of day. Results based on observational data indicated significant differences in group size and selected prey. For S. frontalis, lactating females had the most distinct diet, which differed from that of non-reproductively active (NRA) females. Pregnant females had ambiguous prey use results, but diet differences were revealed through nutritional analysis. Lactating females had a higher intake of all nutrients (% moisture, % lipid, % protein, and calories) than pregnant females but lower than NRA females. Mother and calf pairs selected prey for caloric and moisture values. The influence of calves on foraging groups was reflected through discrete differences in all nutrients. Males and females appeared to select the same major prey, but female prey use was much more diverse.
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Date Issued: 2011
PURL: http://purl.flvc.org/FAU/3318668
Subject Headings: Dolphins, Habitat, Predatory marine animals, Ecology, Marine ecosystem management, Predation (Biology), Aquatic mammals, Behavior
Format: Document (PDF)

Title: Molecular and phenotypic characterization of MsrA MsrB mutants of Drosophila melanogaster.
Creator: Robbins, Kelli., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Aging is a multifactoral biological process of progressive and deleterious changes partially attributed to a build up of oxidatively damaged biomolecules resulting from attacks by free radicals. Methionine sulfoxide reductases (Msrs) are enzymes that repair oxidized methionine (Met) residues found in proteins. Oxidized Met produces two enantiomers, Met-S-(o) and Met-R-(o), reduced by MsrA and MsrB respectively. Unlike other model organisms, our MsrA null fly mutant did not display increased...
Show moreAging is a multifactoral biological process of progressive and deleterious changes partially attributed to a build up of oxidatively damaged biomolecules resulting from attacks by free radicals. Methionine sulfoxide reductases (Msrs) are enzymes that repair oxidized methionine (Met) residues found in proteins. Oxidized Met produces two enantiomers, Met-S-(o) and Met-R-(o), reduced by MsrA and MsrB respectively. Unlike other model organisms, our MsrA null fly mutant did not display increased sensitivity to oxidative stress or shortened lifespan, suggesting that in Drosophila, having either a functional copy of either Msr is sufficient. Here, two Msr mutant types were phenotypically assayed against isogenic controls. Results suggest that only the loss of both MsrA and MsrB produces increased sensitivity to oxidative stress and shortened lifespan, while locomotor defects became more severe with the full Msr knockout fly.
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Date Issued: 2009
PURL: http://purl.flvc.org/FAU/359920
Subject Headings: Genetic regulation, Oxidation-reduction reaction, Proteins, Chemical modification, Aging, Molecular aspects, Mutation (Biology), Cell metabolism, Mitochondrial DNA
Format: Document (PDF)

Title: Phosphate-associated phenotype plasticity as a driver of cattail invasion in the sawgass-dominated Everglades.
Creator: Webb, James., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: In plants, phenotypic plasticity, the ability to morphologically adapt to new or broad environmental conditions, is a consequence of long-term evolutionary genetic processes. Thus, plants adapted to low phosphate (P) environments exhibit only limited plasticity to take advantage of nutrient enrichment, a global phenomenon in terrestrial and aquatic environments. In the face of anthropogenic P-enrichment, low nutrient adapted resident plant species are frequently displaced by species with high...
Show moreIn plants, phenotypic plasticity, the ability to morphologically adapt to new or broad environmental conditions, is a consequence of long-term evolutionary genetic processes. Thus, plants adapted to low phosphate (P) environments exhibit only limited plasticity to take advantage of nutrient enrichment, a global phenomenon in terrestrial and aquatic environments. In the face of anthropogenic P-enrichment, low nutrient adapted resident plant species are frequently displaced by species with high morphological and genetic plasticity. However, it remains unclear whether plasticity is systemically expressed across molecular, biochemical, physiological, and morphological processes that ultimately contribute to the root and shoot phenotypes of plants. In this study, we demonstrated high plasticity in root-borne traits of sawgrass (Cladium jamaicense), the dominant plant species of the P-impoverished Everglades, and counter the idea of inflexibility in low P adapted species. However, sawgras s expressed inflexibility in processes contributing to shoot phenotypes, in contrast to cattail, which was highly plastic in shoot characteristics vii in response to P enrichment. In fact, plasticity in cattail shoots is likely a function of its growth response to P that was globally regulated by P-availability at the level of transcription. Plasticity and inflexibility in the growth of both species also diverged in their allocation of P to the chloroplast for growth in cattail versus the vacuole for P storage in sawgrass. In the Everglades, anthropogenic P-enrichment has changed the environment from a P-limited condition, where plasticity in root-borne traits of sawgrass was advantageous, to one of light-competition, where plasticity in shoot-borne traits drives competitive dominance by cattail., We hypothesize that these shifts in plasticity competitive advantage from root to shoots has been a major driver of cattail expansion in the Everglades ecosystem. Further, this understanding of how natural plant species adapt and shift in response to nutrient availability could also be used a model system to optimize agricultural systems to increase efficiencies in food production and protect low nutrient adapted natural systems from cultural eutrophication.
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Date Issued: 2010, 2010
PURL: http://purl.flvc.org/FAU/2979377
Subject Headings: Ecosystem management, Vegatation dynamics, Phosphorous, Physiological transport, Biogeochemical cycles
Format: Document (PDF)

Title: Prevalence of antibiotic resistant commensal bacteria in endangered avian species.
Creator: Efstathion, Caroline Ann, Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: This study examines prevalence of antibiotic resistant bacteria in Amazon parrots in three different groups, one wild and two captive. Commensal bacteria were isolated from 24 parrots and screened for antibiotic resistance. Culture-based and molecular methods were used and a total of 546 isolates from the genus Staphylococcus and Rothia were obtained. Antibiotic resistance was found in all parrot groups in 161 isolates with 48 having multi-drug resistance. The highest frequency of resistance...
Show moreThis study examines prevalence of antibiotic resistant bacteria in Amazon parrots in three different groups, one wild and two captive. Commensal bacteria were isolated from 24 parrots and screened for antibiotic resistance. Culture-based and molecular methods were used and a total of 546 isolates from the genus Staphylococcus and Rothia were obtained. Antibiotic resistance was found in all parrot groups in 161 isolates with 48 having multi-drug resistance. The highest frequency of resistance was found to Enrofloxacin and Amoxicillin/Clavulnate though all antibiotics tested were resisted by some bacterial isolates. Both captive groups exhibited more resistant individuals than the wild. This study concluded that antibiotic resistant commensal bacteria in Amazons are common; however, patterns found cannot be explained by antibiotic use. A high rate of multi-drug resistance was detected in more common mannitol non-fermenting Staphylococcus spp., and drug resistant detected in Rothia spp. may indicate a future role in disease.
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Date Issued: 2011
PURL: http://purl.flvc.org/FAU/3170956
Subject Headings: Parrots, Drug resistance in microoganisms, Wildlife conservation, Host-bacteria relationship, Microbial ecology
Format: Document (PDF)

Title: Phenotypic and behavioral effects of methionine sulfoxide reductase deficiency and oxidative stress in Drosophila melanogaster.
Creator: Mulholland, Kori., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Harman's theory of aging proposes that a buildup of damaging reactive oxygen species (ROS) is one of the primary causes of the deleterious symptoms attributed to aging. Cellular defenses in the form of antioxidants have evolved to combat ROS and reverse damage; one such group is the methionine sulfoxide reductases (Msr), which function to reduce oxidized methionine. MsrA reduces the S enantiomer of methionine sulfoxide, Met-S-(o), while MsrB reduces the R enantiomer, Met-R-(o). The focus of...
Show moreHarman's theory of aging proposes that a buildup of damaging reactive oxygen species (ROS) is one of the primary causes of the deleterious symptoms attributed to aging. Cellular defenses in the form of antioxidants have evolved to combat ROS and reverse damage; one such group is the methionine sulfoxide reductases (Msr), which function to reduce oxidized methionine. MsrA reduces the S enantiomer of methionine sulfoxide, Met-S-(o), while MsrB reduces the R enantiomer, Met-R-(o). The focus of this study was to investigate how the absence of one or both forms of Msr affects locomotion in Drosophila using both traditional genetic mutants and more recently developed RNA interference (RNAi) strains. Results indicate that lack of MsrA does not affect locomotion. However, lack of MsrB drastically reduces rates of locomotion in all age classes. Furthermore, creation of an RNAi line capable of knocking down both MsrA and MsrB in progeny was completed.
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Date Issued: 2013
PURL: http://purl.flvc.org/fcla/dt/3362558
Subject Headings: Drosophila melanogaster, Genetics, Aging, Molecular aspects, Oxidative stress, Mitochondrial pathology, Cellular signal transduction, Oxidation-reduction reaction, Biochemical markers, Mutation (Biology)
Format: Document (PDF)

Title: Population structure and dispersal of bottlenose dolphins (Tursiops truncatus) of the Indian River Lagoon Estuary, Florida, and adjacent Atlantic waters.
Creator: Rodgers, Sarah E., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: Worldwide research of bottlenose dolphins (Tursiops truncatus) has led to varied definitions and terminology regarding ways to group dolphins for study and management. An understanding of the demographic history and population structure of bottlenose dolphins residing within the Indian River Lagoon Estuary System (IRLES), Florida, is needed to help define the IRLES dolphin population: ecotype, population, or community. Using mitochondrial DNA sequencing and microsatellite genotyping, this...
Show moreWorldwide research of bottlenose dolphins (Tursiops truncatus) has led to varied definitions and terminology regarding ways to group dolphins for study and management. An understanding of the demographic history and population structure of bottlenose dolphins residing within the Indian River Lagoon Estuary System (IRLES), Florida, is needed to help define the IRLES dolphin population: ecotype, population, or community. Using mitochondrial DNA sequencing and microsatellite genotyping, this study detected: (1) genetic differentiation between estuarine and coastal individuals (FstmtDNA=0.414, Fstmsat=0.057; p<0.05; K=2), (2) genetic differentiation between the Indian River Lagoon (IRL) and Mosquito Lagoon (ML) (FstmtDNA=0.0201, Fstmsat=0.0234; p<0.09), and (3) minute undefined sub-structure within the IRLES (FstmtDNA=-0.00 -0.0379, Fstmsat=0.00 - vii 0.0445; p>0.1). Additionally, within ML this study detected non-mixing cohabitation of two potential ecotypes, estuarine and coastal. These findings raise many questions regarding how dolphins are presently categorized and managed which are critical to population assessments including abundance, vital rates, and health.
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Date Issued: 2013
PURL: http://purl.flvc.org/fcla/dt/3362568
Subject Headings: Biogeography, Bottlenose dolphin, Behavior, Bottlenose dolphin, Geographical distribution, Bottlenose dolphin
Format: Document (PDF)

Title: Thermodynamics-structure correlations of interactions between metalloproteinases and tissue inhibitors of metalloproteinase variants.
Creator: Wu, Ying., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: The 23 matrix metalloproteinases (MMPs) in humans catalyze the turnover of all protein components of the extracellular matrix (ECM) and have important roles in tissue remodeling, wound healing, embryo implantation, cell migration and shedding of cell surface proteins. Excess MMP activities are associated with many diseases including arthritis, heart disease and cancer. The activities of MMPs are regulated by a family of four protein inhibitors, the tissue inhibitors of metalloproteinases ...
Show moreThe 23 matrix metalloproteinases (MMPs) in humans catalyze the turnover of all protein components of the extracellular matrix (ECM) and have important roles in tissue remodeling, wound healing, embryo implantation, cell migration and shedding of cell surface proteins. Excess MMP activities are associated with many diseases including arthritis, heart disease and cancer. The activities of MMPs are regulated by a family of four protein inhibitors, the tissue inhibitors of metalloproteinases (TIMPs), that are endogenous inhibitors of matrix metalloproteinases (MMPs), ADAMs (A Disintegrin And Metalloproteinase) and ADAMTS (disintegrin-metalloproteinase with thrombospmdin motifs) .... The balance between TIMPs and active metzinicins is very important and imbalances are linked to human diseases such as arthritis, cancer, and atherosclerosis. The engineering of TIMPs to produce specific inhibitors of individual MPs could provide new therapeutic principles for disease treatment, but this requires a detailed understanding of the biophysical and structural basis of the interactions of TIMPs and MMPs and ADAMs.
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Date Issued: 2012
PURL: http://purl.flvc.org/FAU/3356904
Subject Headings: Proteolytic enzymes, Metalloproteinase, Inhibitors, Apoptosis, Extracellular matrix proteins
Format: Document (PDF)

Title: The ascidian Styela plicata as a potential bioremediator of bacterial and algal contamination of marine estuarine waters.
Creator: Draughon, Lisa D., Charles E. Schmidt College of Science, Department of Biological Sciences
Abstract/Description: The tunicate Styela plicata (Ascidiacea) was investigated for its potential use in bioremediation of bacteria and microalgae blooms from estuarine waters. Salinity tolerances, filtration rate, substrate selection, and effects on digested bacteria and ichthyofaunal communities were examined. If acclimated slowly, Styela can be placed in salinities as low as 24 parts per thousand (ppt) before increased fatalities result. An immediate decrease in salinity from 32 ppt to 20 ppt was not...
Show moreThe tunicate Styela plicata (Ascidiacea) was investigated for its potential use in bioremediation of bacteria and microalgae blooms from estuarine waters. Salinity tolerances, filtration rate, substrate selection, and effects on digested bacteria and ichthyofaunal communities were examined. If acclimated slowly, Styela can be placed in salinities as low as 24 parts per thousand (ppt) before increased fatalities result. An immediate decrease in salinity from 32 ppt to 20 ppt was not detrimental at short term exposure (four days). One average-sized (~40g) Styela, exposed to 105 and 106 bacteria or microalgae mL-1, can filter as much as 4.7 L hr-1 and 3.3 L hr-1, respectively. Individual tunicate filtration rates varied from hour to hour, independent of organism size, indicating that filtration rates for this species would be better reported on a population basis rather than on an individual weight or size basis. Bacterial viability in tunicate feces was assessed by ATP analysis. Bacteria were found to be non-viable after passage through the tunicate digestive tract. Filtration of eggs or larvae of recreationally or commercially important fish is of concern. The smallest eggs (~0.6mm) reported in the Indian River Lagoon belong to Cynoscion nebulosus (spotted seatrout) and Bairdiella chrysoura (silver perch). Over the course of two hours, 72.5% of 0.5 mm glass beads (simulated fish eggs) were initially retained, but many were later expelled by the tunicates. For 1.0 mm beads, 49.4% were initially retained and for 2.0 mm beads, 43.5% were initially retained. Neither the size of the oral siphon nor the size of the overall animal was correlated to bead retention. Substrate selection was investigated using the tunicate Phallusia nigra., Newly hatched larvae preferred settling on wood (53.7%), as compared to polyethylene (30.9%), high-density polyethylene (13.0%), and polyvinyl chloride (2.4%). Overall, results of this study indicate S. plicata is very effective at removing bacteria and microalgae from estuarine waters. However, further testing is warranted regarding the unwanted removal of fish eggs and larvae before utilization of S. plicata for bioremedial purposes.
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Date Issued: 2010
PURL: http://purl.flvc.org/FAU/1927312
Subject Headings: Marine bioremediation, Estuarine ecology, Water quality management, Water quality biological assessment
Format: Document (PDF)

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